Data

Shared multi-modal clinical data

Structured EHR Notes Images Genomics

6.5M+ UCSF Health Patients
1.2M+ SFDPH Health Patients
217M+ Encounters
40+ Years of Activity

 198M+ Notes
10.2B+ Concepts		 180M+ Images
220k exams		 25k+ Cancer Panel
Testing Results

Information Commons hosts multi-factor and multi-modal data, including UCSF’s structured clinical data, clinical notes, meta-data on clinical notes, extracted concepts from clinical notes using Natural Language Processing (NLP) and other approaches, radiological images, meta-data extracted from DICOM (Digital Imaging and Communications in Medicine) headers.  Other sources are planned to be added in the future, including omics data (cancer and germline), pathology slides, waveform data from bedside monitoring devices, data from UC Health Data Warehouse.

 

Currently Available Data Sources

Structured de-identified Electronic Health Records (EHR)

Notes

Radiology Images 

Images are being added to the Information Commons 1 cohort at a time and on request. There are currently ~220k imaging exams available in the IC and the number is growing. To request a cohort of images that are not in the IC, please submit a request. To fulfill the request you will need to provide a list of deidentified “accession numbers” obtained from the IC structured data sources listed above.   

If you need help, please indicate that in your request and someone from ci2 will contact you. 

Images are only available on the IC Wynton App Server. 

Genomics 

Cancer genetic testing panels for UCSF 500 and Foundation Medincine   

Data Sources Under Development

  • Benioff Center for Microbiome Medicine (BCMM)
  • Digital Pathology
  • Genomic Information Management System (GIMS)
  • Health IT Platform for Advanced Computing (HIPAC)
  • ImmunoX/Data Library

Learn More

Research Data Assets Wiki 

UCSF data resources for research